Genetic continuity and change among the Indigenous peoples of … – Nature.com

Golla, V. California Indian Languages (Univ. California Press, 2011).

Carpenter, J. P., Sanchez, G. & Villalpando, M. E. in Traditions, Transitions, and Technologies: Themes in Southwestern Archaeology (ed. Schlanger, S. H.) 245258 (Univ. Press of Colorado, 2002).

LeBlanc, S. A. in Archaeology without Borders: Contact, Commerce, and Change in the US Southwest and Northwestern Mexico (eds Webster, L. D. & McBrinn, M. E.) 107142 (Univ. Press of Colorado, 2008).

Mabry, J. B., Carpenter, J. P. & Sanchez, G. in Archaeology without Borders: Contact, Commerce, and Change in the US Southwest and Northwestern Mexico (eds Webster, L. D. & McBrinn, M. E.) 155183 (Univ. Press of Colorado, 2008).

Breschini, G. S. Models of Population Movement in Central California Prehistory (Coyoye Press, 1984).

Erlandson, J. M. et al. Paleoindian seafaring, maritime technologies, and coastal foraging on Californias Channel Islands. Science 331, 11811185 (2011).

Article CAS PubMed ADS Google Scholar

Johnson, J. R. & Lorenz, J. G. Genetics, linguistics, and prehistoric migrations: An analysis of California Indian mitochondrial DNA lineages. J. Calif. Gt. Basin Antrhopol. 26, 3364 (2006).

Google Scholar

DeLancey, S. & Golla, V. The Penutian hypothesis: retrospect and prospect. Int. J. Am. Linguist. 63, 171202 (1997).

Article Google Scholar

Merrill, W. L. et al. The diffusion of maize to the southwestern United States and its impact. Proc. Natl Acad. Sci. USA 106, 2101921026 (2009).

Article CAS PubMed PubMed Central ADS Google Scholar

Shaul, D. L. A PreHistory of Western North America: The Impact of Uto-Aztecan Languages. (Univ. of New Mexico Press, 2014).

Greenhill, S. J. et al. A recent northern origin for the Uto-Aztecan family. Preprint at SocArXiv https://doi.org/10.31235/osf.io/k598j (2023).

Hill, J. H. ProtoUtoAztecan: a community of cultivators in Central Mexico? Am. Anthropol. 103, 913934 (2001).

Article Google Scholar

Fowler, C. S. Some lexical clues to Uto-Aztecan prehistory. Int. J. Am. Linguist. 49, 224257 (1983).

Article Google Scholar

Scheib, C. L. et al. Ancient human parallel lineages within North America contributed to a coastal expansion. Science 360, 10241027 (2018).

Article CAS PubMed ADS Google Scholar

Rasmussen, M. et al. The genome of a Late Pleistocene human from a Clovis burial site in western Montana. Nature 506, 225229 (2014).

Article CAS PubMed PubMed Central ADS Google Scholar

Posth, C. et al. Reconstructing the deep population history of Central and South America. Cell 175, 11851197.e22 (2018).

Article PubMed PubMed Central Google Scholar

Hill, J. in Examining the Farming/Language Dispersal Hypothesis (eds Bellwood, P. & Renfew, C.) 331340 (MacDonald Institute for Archaeological Research, 2003).

Vellanoweth, R. L. AMS radiocarbon dating and shell bead chronologies: Middle Holocene trade and interaction in western North America. J. Archaeolog. Sci. 28, 941950 (2001).

Article Google Scholar

Moreno-Mayar, J. V. et al. Early human dispersals within the Americas. Science 362, eaav2621 (2018).

Article PubMed ADS Google Scholar

Bellwood, P. et al. First farmers: the origins of agricultural societies. Camb. Archaeol. J. 17, 87109 (2007).

Article Google Scholar

Glassow, M. A. et al. in California Prehistory: Colonization, Culture, and Complexity (eds Jones, T. L. & Klar, K. A.) 191213 (Altamira Press, 2007).

Kelley, J. C. & Reyman, J. in The Gran Chichimeca: Essays on the Archaeology and Ethnohistory of Northern Mesoamerica (ed. Reyman, J. E.) 103172 (Avebury Ashgate, 1995).

Coulam, N. J. The appearance of contracting stem dart points in the Western United States, diffusion or migration? KIVA 88, 355371 (2022).

Article Google Scholar

Barrett, S. A. The Washo Indians. Bull. Pub. Mus. Milwaukee 2, 113 (1917).

Google Scholar

dAzevedo, W. L. Handbook of North American Indians. Great Basin. Vol. 11 (Smithsonian Institution, 1986).

Eshleman, J. A. et al. Mitochondrial DNA and prehistoric settlements: native migrations on the western edge of North America. Hum. Biol. 76, 5575 (2004).

Article PubMed Google Scholar

Kaestle, F. A. & Smith, D. G. Ancient mitochondrial DNA evidence for prehistoric population movement: the Numic expansion. Am. J. Phys. Anthropol. 115, 112 (2001).

Article CAS PubMed Google Scholar

Siegel, J. S. in Demographic and Socioeconomic Basis of Ethnolinguistics 427484 (Springer, 2018).

Severson, A. L. et al. Ancient and modern genomics of the Ohlone Indigenous population of California. Proc. Natl Acad. Sci. USA 119, e2111533119 (2022).

Article CAS PubMed PubMed Central Google Scholar

Garca-Ortiz, H. et al. The genomic landscape of Mexican Indigenous populations brings insights into the peopling of the Americas. Nat. Commun. 12, 5942 (2021).

Article PubMed PubMed Central ADS Google Scholar

Villa-Islas, V. et al. Demographic history and genetic structure in pre-Hispanic Central Mexico. Science 380, eadd6142 (2023).

Article CAS PubMed Google Scholar

Jones, T. L. & Klar, K. A. Diffusionism reconsidered: linguistic and archaeological evidence for prehistoric Polynesian contact with southern California. Am. Antiq. 70, 457484 (2005).

Article Google Scholar

Arnold, J. E. Credit where credit is due: the history of the Chumash oceangoing plank canoe. Am. Antiq. 72, 196209 (2007).

Article Google Scholar

Nakatsuka, N. et al. A Paleogenomic reconstruction of the deep population history of the Andes. Cell 181, 11311145.e21 (2020).

Article CAS PubMed PubMed Central Google Scholar

Kennett, D. J. et al. South-to-north migration preceded the advent of intensive farming in the Maya region. Nat. Commun. 13, 1530 (2022).

Article CAS PubMed PubMed Central ADS Google Scholar

Fernandes, D. M. et al. A genetic history of the pre-contact Caribbean. Nature 590, 103110 (2021).

Article CAS PubMed ADS Google Scholar

da Fonseca, R. R. et al. The origin and evolution of maize in the southwestern United States. Nat. Plants 1, 14003 (2015).

Article PubMed Google Scholar

Carpenter, J., Snchez, G., Snchez, I. & Vierra, B. J. in The Archaic Southwest: Foragers in an Arid Land (ed. Vierra, B. J.) 98118 (Univ. of Utah Press, 2018).

Carpenter Slavens, J. & Snchez, G. Los cambios ambientales del Holoceno medio/Holoceno tardo en el desierto de Sonora y sus implicaciones en la diversificacin del Yuto-Aztecano y la difusin del maz. Dilogo Andino https://doi.org/10.4067/S0719-26812013000100013 (2013).

Kennett, D. J., Kennett, J. P., Erlandson, J. M. & Cannariato, K. G. Human responses to Middle Holocene climate change on Californias Channel Islands. Quat. Sci. Rev. 26, 351367 (2007).

Article ADS Google Scholar

Fitzgerald, R. T., Rosenthal, J. S., Eerkens, J. W., Nicholson, D. & Spero, H. J. The distribution of Olivella grooved rectangular beads in the Far West. J. Calif. Gt. Basin Anthropol. 38, 241252 (2018).

Google Scholar

Hughes, R. E. Obsidian studies in California archaeology. Quat. Int. 482, 6782 (2018).

Article Google Scholar

Reimer, P. J. et al. The IntCal20 Northern Hemisphere radiocarbon age calibration curve (055 cal kBP). Radiocarbon 62, 725757 (2020).

Article CAS Google Scholar

Heaton, T. J. et al. Marine20the marine radiocarbon age calibration curve (055,000 cal BP). Radiocarbon 62, 779820 (2020).

Article CAS Google Scholar

Hendy, I. et al. Resolving varve and radiocarbon chronology differences during the last 2000 years in the Santa Barbara Basin sedimentary record, California. Quat. Int. 310, 155168 (2013).

Article Google Scholar

Nakatsuka, N. et al. Ancient genomes in South Patagonia reveal population movements associated with technological shifts and geography. Nat. Commun. 11, 3868 (2020).

Article CAS PubMed PubMed Central ADS Google Scholar

Dabney, J. et al. Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments. Proc. Natl Acad. Sci. USA 110, 1575815763 (2013).

Article CAS PubMed PubMed Central ADS Google Scholar

Korlevic, P. et al. Reducing microbial and human contamination in DNA extractions from ancient bones and teeth. BioTechniques 59, 8793 (2015).

Article CAS PubMed ADS Google Scholar

Sirak, K. A. et al. A minimally-invasive method for sampling human petrous bones from the cranial base for ancient DNA analysis. BioTechniques 62, 283289 (2017).

Article CAS PubMed Google Scholar

Rohland, N., Harney, E., Mallick, S., Nordenfelt, S. & Reich, D. Partial uracil-DNA-glycosylase treatment for screening of ancient DNA. Philos. Trans. R. Soc. Lond. B Biol. Sci. 370, 20130624 (2015).

Article PubMed PubMed Central Google Scholar

DeAngelis, M. M., Wang, D. G. & Hawkins, T. L. Solid-phase reversible immobilization for the isolation of PCR products. Nucleic Acids Res. 23, 47424743 (1995).

Article CAS PubMed PubMed Central Google Scholar

Rohland, N. & Reich, D. Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture. Genome Res. 22, 939946 (2012).

Article CAS PubMed PubMed Central Google Scholar

Maricic, T., Whitten, M. & Paabo, S. Multiplexed DNA sequence capture of mitochondrial genomes using PCR products. PLoS ONE 5, e14004 (2010).

Article PubMed PubMed Central ADS Google Scholar

Fu, Q. et al. An early modern human from Romania with a recent Neanderthal ancestor. Nature 524, 216219 (2015).

Article CAS PubMed PubMed Central ADS Google Scholar

Mathieson, I. et al. Genome-wide patterns of selection in 230 ancient Eurasians. Nature 528, 499503 (2015).

Article CAS PubMed PubMed Central ADS Google Scholar

Haak, W. et al. Massive migration from the steppe was a source for Indo-European languages in Europe. Nature 522, 207211 (2015).

Article CAS PubMed PubMed Central ADS Google Scholar

Li, H. & Durbin, R. Fast and accurate long-read alignment with BurrowsWheeler transform. Bioinformatics 26, 589595 (2010).

Article PubMed PubMed Central Google Scholar

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