Category Archives: Biochemistry

Post-Doctoral Associate in the Division of Science, Biochemistry, Dr. Azam Gholami job with NEW YORK UNIVERSITY ABU DHABI | 300813 – Times Higher…

Description

Applications are invited for a fully-funded Post-Doctoral Associate position in the newly established multidisciplinary group of Prof. Azam Gholami at New York University Abu Dhabi. The appointed candidate will be expected to work on:

We seek a highly qualified candidate with a strong background in protein production and purification with a focus on trans-membrane proteins. The appointed candidate will be expected to be familiar with bacterial protein expression and chromatographic purification techniques. Expertise in the reconstitution of membrane proteins into lipid vesicles/polymersomes and skills in microfluidics and optical microscopy are highly advantageous.

Applicants must have a Ph.D. in protein biochemistry or a related field and an excellent track record of original research on the relevant topics. For consideration, applicants need to submit a cover letter, curriculum vitae with full publication list, statement of research accomplishments and interests and contact information for at least three references, all in PDF format. If you have any questions, please email Prof. Azam Gholami atag9141@nyu.edu

This position is not located in the United States and the applicant must be willing to relocate to Abu Dhabi, United Arab Emirates.

The terms of employment are very competitive and include housing and educational subsidies for children. Applications will be accepted immediately and candidates will be considered until the position is filled.

About NYUAD

NYU Abu Dhabi is a degree-granting research university with a fully integrated liberal arts and science undergraduate program in the Arts, Sciences, Social Sciences, Humanities, and Engineering. NYU Abu Dhabi, NYU New York, and NYU Shanghai, form the backbone of NYUs global network university, an interconnected network of portal campuses and academic centers across six continents that enable seamless international mobility of students and faculty in their pursuit of academic and scholarly activity. This global university represents a transformative shift in higher education, one in which the intellectual and creative endeavors of academia are shaped and examined through an international and multicultural perspective. As a major intellectual hub at the crossroads of the Arab world, NYUAD serves as a center for scholarly thought, advanced research, knowledge creation, and sharing, through its academic, research, and creative activities.

EOE/AA/Minorities/Females/Vet/Disabled/Sexual Orientation/Gender Identity Employer

UAE Nationals are encouraged to apply

Equal Employment Opportunity Statement

For people in the EU, click here for information on your privacy rights under GDPR:www.nyu.edu/it/gdpr

NYU is an equal opportunity employer committed to equity, diversity, and social inclusion.

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Post-Doctoral Associate in the Division of Science, Biochemistry, Dr. Azam Gholami job with NEW YORK UNIVERSITY ABU DHABI | 300813 - Times Higher...

Seeing the molecular beauty of life – ASBMB Today

When Collins Maina was in secondary school in Kenya, a genetics class piqued his interest in science. He found especially fascinating how certain mutations can be disastrous to the well-being of organisms. And when he took his national exams, he was placed into a biochemistry program, which coincidentally turned out to be a good move for him.

Collins Maina

Collins Maina earned his bachelors degree in biochemistry and molecular biologyfrom South Eastern Kenya University in November.

Maina attended South Eastern Kenya University, where he earned his bachelors degree in biochemistry and molecular biology in November. He said two particularly memorable classes were Biochemistry of Tumors and Biochemical Techniques and Instrumentation.

Not only were these classes interesting, he said, but he also was able to apply what he learned to his own life situation. Learning about the molecular and cellular bases of tumors helped him and his family when his grandfather developed prostate cancer.

I remember I was the go-to guy for the family when they wanted to sort of analyze and translate the pathologists reports, he said.

Learning about laboratory techniques in biochemistry was a highlight for Maina because of the physics involved. He was also able to carry and apply some of this knowledge to his career in industry as a medical representative.

In general, Maina said, biochemistry has helped him better understand what life is and how complex it is at the molecular level.

Its really fun knowing very well that beyond what you see in a person, you see there are a couple of three-letter sequences (codons) that determine who you are, determine the personality, determine so many things in your life how a mishap in the placement of an amino acid, how a molecule that lacks the right conformation can have very detrimental effects on an organism, he said. At the basic level they are nothing more than molecules, very beautiful molecules.

Maina values how relatable biochemistry is to real life. If I dont watch my health currently, Im expecting to develop osteoporosis as I get into my 40s, he said. And so, its like reading the future.

While applying to postgraduate programs and reading extensively about various areas of research, Maina has developed a passion for molecular microbiology and is particularly interested in quorum sensing, which involves responding to cell population density via gene regulation. He plans to continue his studies by earning a Master of Science degree, preferably in Canada, the United States, Scotland or New Zealand. He easily excelled in his undergraduate courses, but the high cost of and limited access to good schools make this goal quite difficult. Few research jobs are available in Kenya. Still, he remains hopeful.

Eventually, Maina said, he sees himself completing a Ph.D. program, doing a lot of research and retiring as a lecturer.

I have so many questions I think I need to answer, he said.

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Seeing the molecular beauty of life - ASBMB Today

10 scientists elected leaders of the ASBMB – EurekAlert

Members of the American Society for Biochemistry and Molecular Biology have elected several new leaders. Three members of the governingCouncilwere re-elected. Theres a new secretary. And both theNominating Committeeand the Publications Committeehave new members.

Council

TheASBMB Councilserves as an advisory board to the president and the executive director for setting priorities and strategic directions, overseeing resource allocations, and ensuring that all activities align with the mission of the society. Councilors are elected for three-year terms and can be re-elected or reappointed to serve one additional term. Three incumbents were re-elected to the Council.

Suzanne Barbourisa professor anddean of the Graduate School at theUniversity of North Carolina at Chapel Hill. She wrote in her candidate statement: During my first term, I have learned more about our society, its challenges and opportunities. I am particularly intrigued by an opportunity that was discussed at a recent Council meeting: pursuing philanthropic support for the ASBMB. My experience as a dean, working with alumni, friends and prospective donors, will be helpful for this effort. Barbour is a former member ofthe Minority Affairs Committee (now the Maximizing Access Committee), has organizedannual meeting symposiaand was honored as a member ofthefirst class of ASBMB fellowsin 2021.Read herfull candidate profile.

Joan Broderickis a professor and department head atMontana State University. In 2022, she becamean elected member of the National Academy of Sciences. Broderick has been at Montana State since 2005; before that she was on the faculty ofa small liberal arts college and a research-intensive state university. This range of experiences has given me a broad perspective on science education and academic research and the intersection of the two, she wrote.Read herfull candidate profile.

Matthew Gentryis a professor at theUniversity of Kentucky. He has served on the societys Membership Committee, Public Affairs Advisory Committee andJournal of Biological Chemistry editorial board. For this term on the Council,he has prioritized sharing with members how to utilize their passions to serve on an ASBMB committee, recruiting the societys next executive director; serving as a resource and adviser to PresidentAnn Stock, who was elected in 2021, and headquarters leaders; and spreading the word about how the ASBMB can help biochemists at all career stages.Read hisfull candidate profile.

Nominating Committee

TheASBMB Nominating Committeenominates regular members of the society to stand for election for president, the Council, the Publications Committee and the Nominating Committee.Committee members are elected for three-year terms and can be re-elected or reappointed to serve one additional term. ASBMB members elected two new committee members this year.

Juan L. Mendozais an assistant professor at theUniversity of Chicago. He twice has co-chaired the Enzyme Interest Group at the ASBMB annual meeting and is an active advocate for diversity and inclusion. I am passionate about making education in STEM accessible to everyone and inspiring future generations of scientists. For me, this includes active participation in community outreach and societies such as the ASBMB, he wrote.Read hisfull candidate profile.

Jeremy Thorneris a distinguished professor emeritus at theUniversity of California, Berkeley. He won the ASBMBsHerb Tabor Research Award in 2019. The many activities of ASBMB are best achieved by ensuring gender equity and diversity in its advisory bodies and leadership, as well as in its general membership, he wrote. To thrive, our organization needs to be inclusive, and to hear from and recruit diverse voices. Hence, the most important function of the Nominating Committee is to make certain we draw on the rich pool of our membership and secure the participation of individuals from all quarters of the biochemical sciences.Read the full candidate profile.

Secretary

The secretary is responsible for reviewing the minutes of the society, serving on the Nominating Committee and the Audit Committee, and completing other duties as assigned by the Council, which may include certifying Council resolutions to support the operations of the society.The secretary is a voting member of Council and participates in the governance of the society. The secretary serves a three-year term.

George Carmanis a distinguished professor atRutgers Universityand director of theRutgers Center for Lipid Research. He won the ASBMBsAvanti Award in Lipids in 2012,has beenan associate editorfor the societys Journal of Lipid Research and Journal of Biological Chemistry, and has served on the Council and several committees. He co-directs the societysLipid Research Division. The ASBMB has been a large part of my professional life since I joined the society in 1980, he wrote. Throughout my career, I have profited from formal and informal mentors, and I am obliged to pay forward my knowledge and experiences to early-career scientists including undergraduate and graduate students, and postdoctoral associates. Carman was a member of the societysinaugural class of fellowsin 2021.Read hisfull candidate profile.

Publications Committee

TheASBMB Publications Committeeoversees the societys scholarly publishing activities, advises the Council on policy and ethical issues that may arise, and advises journal editors about editorial matters, including the approval of associate editor appointments. Committee members are elected for five-year terms and can be re-elected or reappointed to serve one additional term. ASBMB members elected four new committee members.

Walid Houryis a professor at theUniversity of Toronto. Hes been a member of the Journal of Biological Chemistry editorial board since 2017. During his term on the committee, he intends to advocate for innovative article review and publication formats. He wrote: I find this to be especially important given the new and different article reviewing and publishing approaches being used by other journals. Hence, a clear policy needs to be established to address how ASBMB journals will interact with open-access preprint repositories such as bioRxiv and what value will be placed on reviews provided by journal-independent peer-review platforms such as the Review Commons.Read hisfull candidate profile.

Marcelo Kazanietzis a professor at theUniversity of Pennsylvania. He has been an editorial board member for the Journal of Biological Chemistry and several other peer-reviewed publications. I understand emerging challenges to keep disseminating our scientific discoveries in a highly competitive environment.I aim to support efforts toward facilitating communication between editors, authors and readers, with the ultimate goal of promoting high-impact science while affirming strong ethical publishing values, he wrote.Read hisfull candidate profile.

Daniel Leahyis a professor atUniversity of Texas at Austin. He served on the ASBMB Council from 2012 to 2015, has helpedorganize meeting themes and other society events,and is a member of the societys2022 class of fellows. Chief among the jewels in the ASBMB crown are its publications, which are run by scientists for scientists, and I am delighted at the opportunity to help continue the ASBMBs tradition of excellent publications as modes of scientific communication continue to evolve, he wrote.Read hisfull candidate profile.

Anne-Frances Milleris a distinguished professor at theUniversity of Kentucky. She has been a member of the Journal of Biological Chemistry editorial board and a member of the Publications Committee before. I understand that publications are central to both the professional conduct of science and also its social fabric, she wrote. I am a big admirer of how ASBMBs publications have spanned both spheres via the several journals the society produces. ASBMB Today nurtures networks of people and interest and keeps the science fun, engaging us all beyond the boundaries of our own specializations and keeping the best of our humanity connected to the best of our science. Meanwhile, ASBMBs established research journals provide critical channels for sharing high-quality scientific progress, complete with the assurances of expert peer review.Read herfull candidate profile.

About the American Society for Biochemistry and Molecular Biology (ASBMB)

The ASBMB is a nonprofit scientific and educational organization with more than 12,000 members worldwide. Founded in 1906 to advance the science of biochemistry and molecular biology, the society publishes three peer-reviewed journals, advocates for funding of basic research and education, supports science education at all levels, and promotes the diversity of individuals entering the scientific workforce. For more information about the ASBMB, visitwww.asbmb.org.

Disclaimer: AAAS and EurekAlert! are not responsible for the accuracy of news releases posted to EurekAlert! by contributing institutions or for the use of any information through the EurekAlert system.

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10 scientists elected leaders of the ASBMB - EurekAlert

Dr. Nina Schor appointed as the NIH Acting Deputy Director for Intramural Research – National Institutes of Health (.gov)

I am pleased to announce the appointment of Nina F. Schor, M.D., Ph.D., as the NIH Acting Deputy Director for Intramural Research (DDIR) in the NIH Office of the Director. Michael M. Gottesman, M.D., who served as NIH DDIR for 29 years, announced his plans last year to step down to return to the Center for Cancer Research, National Cancer Institute, where he is chief of the Laboratory of Cell Biology. Dr. Schor will begin her new role on August 1, 2022.

As Acting DDIR, Dr. Schor will lead the NIH Intramural Research Program (IRP) and facilitate coordination and collaboration among the 24 NIH institutes and centers that are a part of NIHs distinct research community. She will be responsible for the selection and approval of new NIH principal investigators, human subjects research protection, research integrity, technology transfer, and animal care and use for the IRP. Additionally, Dr. Schor will oversee efforts to train the next generation of biomedical and behavioral researchers at NIH, as well as efforts to foster a diverse and inclusive culture across the IRP.

With a career that has touched all realms of the biomedical research enterprise, Dr. Schor brings substantial experience as an educator, scientist, clinician, and administrator. Dr. Schor joined NIH in January 2018 as Deputy Director of the National Institute of Neurological Disorders and Stroke (NINDS), and in May 2021, she also assumed the role of Acting Scientific Director of NINDS. As Deputy Director, she guided the institutes strategic planning activities, career development programs, maternal and child neurologic health collaborations with other NIH institutes, and the creation and implementation of the Ultra-Rare GENe-based Therapies (URGenT) Network. Prior to joining NIH, Dr. Schor worked at the University of Rochester, where for nearly 12 years she held the positions of Chair of the Department of Pediatrics and Pediatrician-in-Chief of the Golisano Childrens Hospital. Prior to that, she spent 20 years building her academic and scientific career at the University of Pittsburgh, culminating with her roles as Associate Dean for Medical Student Research and Chief of the Division of Child Neurology in the Departments of Pediatrics and Neurology.

Dr. Schor earned her Ph.D. in medical biochemistry from Rockefeller University and her M.D. from Cornell University Medical College. Her residency and postdoctoral fellowship training in pediatrics, child neurology, and molecular biochemistry and pharmacology took place at Harvard University Medical School and Boston Childrens Hospital, where she began her three-decades-long, NIH-funded research efforts focused on targeted therapy for neuroblastoma, a type of pediatric cancer, and neuronal cell death caused by oxidative stress, which occurs when harmful forms of oxygen molecules damage cells.

I am profoundly grateful to Dr. Gottesman for his many years of leadership and service at NIH. With his contagious optimism, adept problem-solving attitude, and wise policymaking, Michael leaves a strong legacy to guide the future DDIR. The programs he developed touch every stage of a scientific career from high school and college internship programs, graduate studies, and postdoctoral training, to recruitment, career development, tenure, and emeritus transition of faculty. His leadership will be remembered in many things, including the remarkable improvements seen in research integrity and the recruitment and subsequent achievements of a diverse scientific workforce over the last three decades. We wish him all the best in this next chapter.

Please join me in welcoming Dr. Schor to the NIH leadership team.

Lawrence A. Tabak, D.D.S., Ph.D.Acting Director, National Institutes of Health

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Dr. Nina Schor appointed as the NIH Acting Deputy Director for Intramural Research - National Institutes of Health (.gov)

U-M researchers track protein binding, build synthetic proteins to study gene expression – University of Michigan News

How does a nose remember that its a nose? Or an eye remember that its an eye?

As scientists probe the question of how cells remember what kind of cells they are supposed to be, or their genetic lineage, its important to understand how cells express different genes without changing the DNA sequence itself.

But studying this subject is difficult: Researchers can purify the proteins that drive genetic expression, put them in a test tube and watch them bind. But doing so inside the nucleus of cells, their native environment, has been so far impossible.

Study: HP1 oligomerization compensates for low-affinity H3K9me recognition and provides a tunable mechanism for heterochromatin-specific localization (DOI: 10.1126/sciadv.abk0793)

Now, a team of researchers at three University of Michigan labs have been able to track how a protein binds to its chromatin substrate within a living cell by establishing a collaboration that combines state-of-the-art ultra high-resolution imaging, synthetic protein design and computational modeling. Their results are published in Science Advances.

The biological question that were asking is, How do cells actually remember past experiences? And how do these experiences also lead to cells establishing distinct identities, as it happens in the case of the human body where you have lineages of cells that form neurons, or blood cells, or brain cells, and all actually maintain their identities for many generations,' said lead author Kaushik Ragunathan, assistant professor of biological chemistry at the U-M Medical School.

An example I like to think about is that if you chop off your nose, you dont get a hand growing there, even though the genome in your nose and the genome in your hand are exactly the same.

Cells control how and which genes are expressed from a copy of the DNA sequence held within each cell, despite that sequence being the same across all cells in the body. One way they control expression is by changing how tightly the DNA is packaged within the nucleus using proteins called histones. Histones can be modified through the addition of small chemical tags that regulate how tightly the DNA is wound around them and thus whether the genes can be expressed.

Proteins that have the ability to read, write and erase these histone tags explore the DNA within the nucleus of the cell very rapidlyon the order of milliseconds, according to Ragunathan. Ultimately, all this epigenetic information needs to be inherited across generations, but the recognition of these tags is a complicated process that involves chromatin binding and proteins meeting and interacting with each other amidst the chaos of all other possible competing interactions within the cell.

Being able to understand each step of the processand therefore enabling control of how the epigenetic information is inheritedintrigued co-author Julie Biteen, professor of chemistry and biophysics.

Biteen uses single-molecule fluorescence imaging to track individual proteins inside cells. Her lab can see where these proteins are relative to the chromatin, and Ragunathans expertise is in the molecular mechanisms underpinning how histone modifications and histone-binding proteins interact. These two worlds needed to come together so that the biochemistry of what happens in a test tube outside of cells could be tested to figure out what happens inside of them.

The timing of this process is critically important to ensure that the right genes are silenced at the right place and at the right time, Biteen said. What hooked me on this project is that in vitroin a test tubeyou can purify two proteins, watch them bind and see how good that binding is, or what is the affinity for one another. That tells you what can happen in the cells, but not what does happen in the cells.

Biteen and Ragunathan worked with Peter Freddolino, associate professor of biological chemistry, and computational medicine and bioinformatics at the U-M Medical School, to combine computer modeling with their experimental results.

This is really where our collaboration becomes really powerful, Biteen said. On one hand, seeing molecules is very helpful and knowing how fast the molecules move helps a lot in terms of understanding what is possible inside the cell, but here we could take a leap forward by perturbing the system even in unnatural ways in order to understand what these different motions of molecules in the cell actually mean.

While epigenetic marks are tremendously important for maintaining different tissues in complex organisms like humans, they also play an important role in regulating genes of single-celled organisms such as yeast. The team focused on a type of HP1 protein in yeast cells called Swi6. This family of proteins binds to a specific type of histone modifications in the cell to enforce gene silencing. By integrating fluorescent labels with Swi6, Bitees lab watched Swi6 move inside the cells nucleus.

While Swi6 searches for the correct binding site on DNA, it moves quickly, Biteen said. When it finds its target, it slows down significantly. The movement of a protein within the cell is akin to gears in a car and things can move at different speeds based on whom proteins interact with.

From these spaghetti tracks that we get inside the cell, we then figure out how much time they are spending searching and how much of the time they are spending bound, Biteen said. The amount of time they spend not moving tells us about how strongly theyre interacting and their biochemical properties.

While Biteens lab can measure movements in the cell on the scale of tens of milliseconds, much of the biochemistry happening in the cell is happening even faster, she said. Freddolino took this experimental information and developed models to estimate the ability of the Swi6 proteins to jump between the binding states that were identified in experiments.

Freddolinos modeling took into account the experimental measurements and the possible biochemical properties, which includes how the Swi6 molecules interact in the cell. These interactions include molecules that freely float in the solution of the cell, molecules that have bound to DNA, and molecules that are holding hands with each other, he said.

My lab wanted to come up with a more fine-grained model that estimated what was the most likely set of molecular states of the proteins and their ability to jump between those states, that would then give rise to the imaging data that Biteens lab created, Freddolino said.

Having this numerical model allows us to do the computational experiments of what happens if the protein binding is twice as fast as we think. What if its 10 times as fast as we think? Or 10 times slower? Could that still give rise to the data? Very happily, in this case, we were able to show that the relevant processes were really being captured in the fluorescence microscopy.

After identifying the binding properties of natural Swi6, the researchers tested their findings by redesigning Swi6 from its components to see whether they could replicate some of its biochemical properties, Ragunathan said. This allowed the researchers to determine that the imaging and modeling conducted in the first part of the paper reflects how the protein was binding in its native environment.

Can we do what nature did over the course of millions of years and make a protein that in many ways has properties similar to that of Swi6 in cells? Ragunathan said. In vivo biochemistry, which is what weve decided to call this, was not something that was ever thought to be possible inside living cells, but we have shown this is entirely feasible by using imaging as a modality. We are using this project as a foundation in order to understand how these epigenetic states can be established and maintained across generations.

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U-M researchers track protein binding, build synthetic proteins to study gene expression - University of Michigan News

University of Houston researchers snag $1.8M to develop cancer-fighting virus – InnovationMap

Viruses attack human cells, and that's usually a bad thing some Houston researchers have received fresh funding to develop and use the evil powers of viruses for good.

The developing cancer treatment is called oncolytic virotherapy and has risen in popularity among immunotherapy research. The viruses can kill cancer cells while being ineffective to surrounding cells and tissue. Basically, the virus targets the bad guys by "activating an antitumor immune response made of immune cells such as natural killer (NK) cells," according to a news release from the University of Houston.

However exciting this rising OV treatment seems, the early stage development is far from perfect. Shaun Zhang, director of the Center for Nuclear Receptors and Cell Signaling at the University of Houston, is hoping his work will help improve OV treatment and make it more effective.

We have developed a novel strategy that not only can prevent NK cells from clearing the administered oncolytic virus, but also goes one step further by guiding them to attack tumor cells. We took an entirely different approach to create this oncolytic virotherapy by deleting a region of the gene which has been shown to activate the signaling pathway that enables the virus to replicate in normal cells, Zhang says in the release.

Zhang, who is also a M.D. Anderson professor in the Department of Biology & Biochemistry, has received a $1.8 million grant from the National Institutes of Health to continue his work.

Zhang and his team are specifically creating a new OV called FusOn-H2 and based on the Herpes simplex 2 virus.

Our recent studies showed that arming FusOn-H2 with a chimeric NK engager (C-NK-E) that can engage the infiltrated natural killer cells with tumor cells could significantly enhance the effectiveness of this virotherapy, he says. Most importantly, we observed that tumor destruction by the joint effect of the direct oncolysis and the engaged NK cells led to a measurable elicitation of neoantigen-specific antitumor immunity.

Shaun Zhang is the director of the Center for Nuclear Receptors and Cell Signaling at the University of Houston and M.D. Anderson professor in the Department of Biology & Biochemistry. Image via UH.edu

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University of Houston researchers snag $1.8M to develop cancer-fighting virus - InnovationMap

Far From the Biliary Tree: A Case of Overlapping Autoimmune Liver Disease in a Patient Presenting With Sicca Symptoms – Cureus

Primary biliary cholangitis (PBC) is achronic autoimmune condition with many extrahepatic manifestations that are commonly encountered as a patient's primary presenting complaints. Rarely, PBC co-exists as an overlapping syndrome with other liver-related autoimmune conditions such as autoimmune hepatitis (AIH). Presented is a rare case of PBC with features of AIH diagnosed in a patient who initially presented with hemoptysis and worsened sicca symptoms due to advanced Sjgrens syndrome. The patient had a three-year evolution of abnormal liver biochemistry and was found to be a heterozygous carrier for hereditary hemochromatosis (H63D mutation). Given that patients with PBC-AIH are at an increased risk of complications compared to isolated disease from either disorder, early diagnosis and prompt management can helpspare patients from cirrhosis, liver failure and transplantation, or even death.

Primary biliary cholangitis (PBC) is an autoimmune liver disease characterized by the progressive destruction of intrahepatic bile ducts. Various genetic and environmental interactions trigger an autoimmune response against biliary epithelial cells, which leads to cholestasis and fibrosisand can ultimately result in liver cirrhosis and failure [1]. The global incidence rate of PBC differs widely among geographic areas, ranging from 40 to 400 per million individuals with a peak incidence in the fifth decade of life and a 10:1 predominance in females compared to males [2]. Symptoms of PBC related to cholestasis typically develop within two to four years of diagnosis and include fatigue, pruritus, dyslipidemia, fat-soluble malabsorption, and osteoporosis, though up to 61% of cases are asymptomatic [2-3]. PBC also has many associations with extrahepatic autoimmune disease, most notably Sjgrens (up to 73%), thyroid dysfunction (up to 23.6%), cutaneous scleroderma (up to 12.3%), and rheumatoid arthritis (RA) (5.6%) [4-6]. The diagnosis of PBC is made if two of the following three criteria are met: (1) biochemical evidence of cholestasis through the elevation of alkaline phosphatase (ALP) to two times the upper limit of normal, (2) presence of antimitochondrial antibody (AMA) with a titer greater than 1:40, (3) histologic evidence of nonsuppurative destructive cholangitis and interlobular bile duct destruction [7-8].

Rarely, PBC can co-exist as an overlapping syndrome with other liver-related autoimmune conditions such as autoimmune hepatitis (AIH). This phenomenon is present in 1-3% of patients with PBC and 7% of patients with AIH [8]. A PBC-AIH overlap syndrome can be diagnosed using the Paris criteria with 92% sensitivity and 97% specificity [9].

For PBC alone, early initiation of ursodeoxycholic acid (UDCA) to slow disease progression is associated with a long-term survival benefit and minimal side effects such as headaches, motility issues, and weight gain. Along with interval monitoring of liver biochemical tests, recommendations for immunizations for hepatitis A and B are given to individuals without serologic evidence of immunity, in addition to abstention from heavy alcohol use. In general, evidence is limited to making treatment recommendations for patients with PBC as well as features of AIH, though it includes UDCA with or without a component of immunosuppression [8].

A 52-year-old female with a history of Sjgrens and rheumatoid arthritis presented to the clinic with worsening sicca symptoms and persistent cough with hemoptysis over the past two weeks. She also reported fatigue and arthralgias. She had been seeing a rheumatologist and had been started on azathioprinetwo years prior, in addition to pilocarpine for dry eyes. She was also taking levothyroxine for hypothyroidism. The patients vital signs were all within normal limits. Her physical exam was notable for a non-tender liver edge palpated six centimeters below the mid-clavicular costal margin with negative shifting dullness or fluid wave. Other pertinent negatives included the absence of icteric sclera,skin hyperpigmentation, gland or lymph node prominence or tenderness, focalizing lung findings, active synovitis or contractures, palmar excoriations, or cutaneous vasculitis.

On review of her medical chart, she had an extensive rheumatologic workup notable for positive antinuclear antibody (ANA), positive anti-SS-A with negative anti-SS-B,positive salivary gland biopsy, and positive rheumatoid factor (RF). She also had a history of consistently elevated gamma-glutamyl transferase (GGT) and alanine (ALT) and aspartate (AST) transaminases with normal alkaline phosphatase (ALP) and normal total and direct bilirubin levels. Labs were obtained at her clinic visit and notable for elevated AST 237 IU/L, ALT 223 IU/L, GGT 169 IU/L, and normal ALP 101 IU/L with otherwise normal complete blood count and mildly elevated values on the lipid panel (Table 1).

Based on her autoimmune history and elevated transaminases, an expandedrheumatologic workup was performed, notable for a positive anti-mitochondrial antibody (AMA) 128.6 U (normal < 20.0 U), negative anti-smooth muscle antibody (ASMA) 11.0 U (normal < 19 U), and immunoglobulin A (IgA) 287 mg/dL (normal 87-352 mg/dL). The patient was referred to a gastroenterologist and found to have a normal esophagogastroduodenoscopy. Upon genetic analysis, the patient was noted to be a carrier for hereditary hemochromatosis (heterozygous carrier for H63D mutation). The rest of her workup was negative, including hepatitis panel, alpha-1-antitrypsin, double-stranded DNAand anti-Smith/ribonucleoprotein antibodies, SCL-70 (scleroderma) antibody, and centromere antibody.

Imaging with ultrasound demonstrated hepatomegaly with fatty infiltration of the liver (Figure 1). The patient was evaluated by a pulmonologist forher cough and hemoptysis and a CT chest was performed. CT imaging demonstrated prominent mucus and debris along the trachea with subpleural reticulations possibly due to respiratory involvement of her Sjgrens syndrome (images were unable to be obtained for inclusion in this article). It also noted questionable hepatic surface lobulation that could represent early cirrhosis morphology. With a positive AMA and biochemical pattern of cholestasis and hepatocellular injury, the patient was referred forliver biopsy, which revealed extensive inflammatory infiltrate consisting of lymphocytes and plasma cells surrounding portal tract structures, with the presence of interface hepatitis into lobular parenchyma (Figure 2). No evidence of malignancy was noted.

The patient met the criteria for diagnosis (Table 2) and was started on UDCA at 15 mg/kg. She was alsocontinued on azathioprine at a therapeutic dose of 2 mg/kg for AIH. At the three-month follow-up, the patient had down-trending transaminases and was reporting subjective improvement in symptoms of fatigue and arthralgias.

Primary biliary cholangitis (PBC) is a rare but potentially life-threatening autoimmune cholestatic disease of the liver that, when left undiagnosed and untreated, can culminate in end-stage liver cirrhosis. Similar to the patient presented in this case report, PBC has a peak prevalence for those between their fourth and sixth decades of life with a predominance for women [2-3]. Diagnostic criteria for primary hepatic autoimmune diseases rely on biochemical evidence of either cholestasis or hepatocellular damage, presence of auto-antibodies, and histopathological features on liver biopsy [7-9]. While present in fewer than 10% of patients with either PBC or AIH, the overlapping syndrome (PBC-AIH) is well-represented in the current case [8]. There are several subtypes and classifications of this condition, though, like other autoimmune disorders, it can be thought to exist on a spectrum of primary tissue involvement. It is hypothesized that patients with underlying bile duct destruction (characteristic of PBC) also possess a genetic predisposition to develop a hepatitic pattern of liver injury (more consistent with AIH), and thus can also be referred to as PBC, hepatitic form [10].

The patient presented in this case report met the Paris criteria for PBC-AIH both on histology as well as an elevated ALT and presence of anti-AMA antibody. Though not meeting diagnostic criteria (5 times upper limit of normal (ULN)), she also had an elevated GGT at 3.1 times ULN. Her past medical history of several extrahepatic autoimmune diseases is consistent with other cases of PBC-AIH. PBC is known to have associations with Sjgrens syndrome in more than half of individualsand to a lesser extent, with thyroid dysfunction, RA, and cutaneous scleroderma[4-6]. Though a majority of patients eventually diagnosed with PBC are asymptomatic, this patient had multiple symptoms on presentation. She presented with cough and hemoptysis along with xerostomia and dry eyes, all potentially attributed to her Sjgrens diagnosis. She was found to have hepatomegaly both on clinical exam and ultrasound imaging, as well as three years of worsening liver transaminases that prompted an expanded autoimmune work-up.

This case highlights the importance of primary care physicians to not only be familiar with the criteria for autoimmune liver diseases but also to not devalue minor changes in liver biochemistry. Though she had been previously followed by a rheumatologist, the patient had been lost to follow-up and her medical record revealed several inconsistencies regarding the interpretation of her autoimmune laboratory findings between specialists and generalists that she had seen in the past. She had also been noted to have an extensive history of alcohol consumption throughout her medical record. While her AST and ALT abnormalities have been attributed to this, her AST:ALT ratio was inconsistent with this assertion.

Interestingly, this patient was also found to be a heterozygous carrier for hereditary hemochromatosis (HH). On discussion with her gastroenterologist, it is difficult to discern the patients elevated ferritin as related to excess collection versus an acute phase reactant given her history of autoimmune disease. In general, HFE H63D heterozygous carriers rarely develop clinically significant iron overload syndromes [11] though may be at increased riskfor breast and colorectal cancers [12-13]. As of the time of this publication, there are no reports in the literature regarding increased rates of PBC or AIH in those with the H63D mutation.

Compared to patients with PBC alone, individuals with PBC-AIH have higher rates of portal hypertension, esophageal varices, gastrointestinal bleeding, ascites, and liver failure [14-15]. Studies have demonstrated death or liver transplantation in PBC-AIH at rates twice as high compared to PBC alone at six-year mean follow-up [14] and nearly four times as high compared to AIH alone at the two-year follow-up [16]. At 10 years following diagnosis, 44-48% of patients with PBC-AIH progress to cirrhosis [8,15], and transplant-free survival ranges from 52-92% [8-9,14].

Goals of management for autoimmune liver disease include suppression of the underlying pathogenic process as well as treatment of acute symptoms that result from chronic cholestasis, including pruritus, fatigue, and xerostomia. Evidence is limited regarding specific treatment recommendations for diseases with overlapping characteristics. The 2018 practice guidelines from the American Association for the Study of Liver Diseases (AASLD) guidelines concede that the clinical benefit and harm of adding immunosuppressive medications require further study, and recommend tailoring pharmacotherapy to the predominant histologic pattern (PBC or AIH) [17-18]. The 2017 practice guidelines from the European Association for the Study of Liver Diseases (EASL) recommend that in addition to UDCA, immunosuppression be given, or considered, in patients with severe to moderate interface hepatitis, respectively [19]. A meta-analysis for the comparative treatment of various overlap syndromes demonstrated that combination therapy with UDCA and immunosuppression may be superior to both UDCA alone and to steroids with or without azathioprine with respect to biochemical improvement and transplant-free survival [8]. The authors concede, however, that these studies are limited by the inclusion ofpatients with a wide range of histologic severity. Additionally, it has been reported that the degree of baseline interface activity on biopsy (pathognomonic of AIH) is a more accurate predictor of failure with UDCA monotherapy compared to the addition of immunosuppressive therapies [19].

Our patient had already been started on azathioprine for her other rheumatological conditions two years prior to her initial presentation to our clinic. Therefore, given her extrahepatic autoimmune diseases that prompted early immunosuppression, she had theoretically been spared from several years of additional damage due to her PBC-AIH. Relapse rates of AIH up to 90% have been demonstrated when discontinuing immunosuppression. Despite this, a withdrawal trial of immunosuppressives can be consideredonce remissionhas been established (normalization of aminotransferases) and maintained for 24 months[19-20]. She was also started on UDCA after confirming the diagnosis with a biopsy and therefore is now on combination UDCA with immunosuppressive therapy. Long-term monitoring for patients with PBC includes liver biochemical and function tests every three to six months in addition to annual screening for thyroid dysfunction and bone mineral densitometry. Of note, our patient did have a degree of long-bone osteopenia on a dual-energy X-ray absorptiometry scan. We also recommended screening for colorectal and breast cancer given her increased risk with HH carrier status.

Primary liver autoimmune conditions are often associated with extrahepatic manifestations, either as a result of chronic cholestatic symptoms or as distinct, laboratory-identifiable syndromes.Therefore, in patients with a significant rheumatological disease history or when a primary autoimmune workup is being performed in the context of abnormal liver biochemistry, PBC and AIH must both be considered. The Paris diagnostic criteria can be used with a high degree of both sensitivity and specificity to either distinguish or correlate these conditions.Based on the current evidence, early initiation of UDCA with immunosuppressive therapies has been shown to help delay cirrhosis, liver failure and transplantation, and even death.

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Far From the Biliary Tree: A Case of Overlapping Autoimmune Liver Disease in a Patient Presenting With Sicca Symptoms - Cureus

Biochemistry Breakthrough May Soon Have Asthmatics Breathing Easier – SciTechDaily

A breakthrough discovery could result in more effective asthma treatments.

Scientists have discovered differences in the biochemistry of asthmatic and non-asthmatics which could lead to more effective treatments.

An important discovery that could lead to more effective treatments for the worlds 262 million asthma sufferers was recently made in research led by Edith Cowan University (ECU).

It found that severe asthmatics have a distinct biochemical (metabolite) profile detectable in their urine, compared to mild-to-moderate asthmatics and healthy individuals. The study was led by Dr. Stacey Reinke (ECU) and Dr. Craig Wheelock (Karolinska Institute, Sweden).

To identify and better understand different subtypes of severe asthma, researchers analyzed urine samples from more than 600 participants across 11 countries as part of the U-BIOPRED study, a Europe-wide initiative.

The team of researchers discovered a specific type of metabolite, called carnitines, decreased in severe asthmatics.

Carnitines play an important role in cellular energy generation and immune responses.

Further analyses found carnitine metabolism was lower in severe asthmatics.

These new findings will help enable researchers to work towards new, more effective therapies for asthmatics.

Dr. Reinke, from ECUs Centre for Integrative Metabolomics and Computational Biology, said it is vital asthma treatment is improved.

Asthma affects 2.7 million Australians and there were 417 asthma-related deaths in Australia in 2020, she said.

Severe asthma occurs when someones asthma is uncontrolled, despite being treated with high levels of medication and/or multiple medications.

To identify and develop new treatment options, we first need to better understand the underlying mechanisms of the disease.

One way to do this is to examine the bodys chemical profile, or metabolome, which provides a snapshot of a persons current physiological state and gives useful insight into disease processes.

In this case, we were able to use the urinary metabolome of asthmatics to identify fundamental differences in energy metabolism that may represent a target for new interventions in asthma control, Dr. Reinke said.

Dr. Reinke said it can be difficult and invasive to investigate the lungs directly but fortunately, they contain a lot of blood vessels.

Therefore, any biochemical changes in the lungs can enter the bloodstream, and then be excreted through the urine, she said.

These are preliminary results, but we will continue to investigate carnitine metabolism to evaluate its potential as a new asthma treatment target.

Reference: Urinary metabotype of severe asthma evidences decreased carnitine metabolism independent of oral corticosteroid treatment in the U-BIOPRED study by Stacey N. Reinke, Shama Naz, Romanas Chaleckis, Hector Gallart-Ayala, Johan Kolmert, Nazanin Z. Kermani, Angelica Tiotiu, David I. Broadhurst, Anders Lundqvist, Henric Olsson, Marika Strm, sa M. Wheelock, Cristina Gmez, Magnus Ericsson, Ana R. Sousa, John H. Riley, Stewart Bates, James Scholfield, Matthew Loza, Frdric Baribaud, Per S. Bakke, Massimo Caruso, Pascal Chanez, Stephen J. Fowler, Thomas Geiser, Peter Howarth, Ildik Horvth, Norbert Krug, Paolo Montuschi, Annelie Behndig, Florian Singer, Jacek Musial, Dominick E. Shaw, Barbro Dahln, Sile Hu, Jessica Lasky-Su, Peter J. Sterk, Kian Fan Chung, Ratko Djukanovic, Sven-Erik Dahln, Ian M. Adcock and Craig E. Wheelock on behalf of the U-BIOPRED Study Group, 30 June 2022, European Respiratory Journal.DOI: 10.1183/13993003.01733-2021

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Biochemistry Breakthrough May Soon Have Asthmatics Breathing Easier - SciTechDaily

Human endogenous retrovirus-K (HERV-K) reverse transcriptase (RT) structure and biochemistry reveals remarkable similarities to HIV-1 RT and…

Human endogenous retrovirus-K (HERV-K) reverse transcriptase (RT) structure and biochemistry reveals remarkable similarities to HIV-1 RT and opportunities for HERV-Kspecific inhibition | Proceedings of the National Academy of Sciences  pnas.org

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Human endogenous retrovirus-K (HERV-K) reverse transcriptase (RT) structure and biochemistry reveals remarkable similarities to HIV-1 RT and...

UA Researchers Develop Way to Test Water for Metal Pollutants – The University of Alabama

Research involving The University of Alabama created an easier way to detect harmful levels of heavy metals in water, which could help improve human health by boosting detection efforts by regulatory agencies, water utilities and commercial fishing.

Dr. Marco Bonizzoni

The new analytical method for detecting harmful levels of heavy metals such as cadmium, mercury and lead was created by combining chemical array sensing methods developed at UA with polymer synthesis capabilities at the University of Southern Mississippi, according to findings recently published in Advanced Functional Materials.

The work is part of a larger, multiyear collaboration led by the University of Mississippi and supported by the National Science Foundation to develop advanced polymer-based, selective sensing technologies for detecting and analyzing pollutants in the coastal aquatic ecosystems of the Gulf of Mexico, which host important fisheries, aquaculture, trading ports, and off-shore oil exploration and production industries.

The new method proved to be unusually robust and sensitive even in complex and challenging samples, down to the extremely low concentrations relevant for environmental monitoring applications in fresh- and saltwater, said Dr. Marco Bonizzoni, UA associate professor of chemistry and biochemistry.

Our method for these analyses uses less complex instrumentation, yet achieves sensitivity similar to established lab-based standard techniques, Bonizzoni said. Additionally, our system is simpler and more rugged than existing techniques, potentially opening the path towards development of a portable device for and point-of-sampling measurements.

At low levels, heavy metals are ubiquitous in the environment and some are essential nutrients for the ecosystem. At increased levels, mostly from human intervention, they threaten human, animal and ecosystem health. Exposure to heavy metals has been linked to neurological disease, organ failure and cancer.

Methods for their rapid and simple detection are a scientific and technological priority. Water utilities regularly monitor these potential contaminants in municipal water. Government regulatory agencies track heavy metals in waters as a proxy for potential contamination of marine life such as fish sold for consumption.

Bonizzoni, associate professor of chemistry and biochemistry, and his group created a simple method for detecting harmful levels of heavy metals in water.

Current methods require lugging water samples taken on location back to a lab for analysis, which is time consuming and requires additional measures to ensure the sample isnt contaminated. The new method could simplify this process greatly by allowing for direct on-site measurements.

For now, researchers demonstrated they can simplify analysis by testing samples taken from the site of the Deep Water Horizon oil spill in the Gulf, gathered by a group led by Dr. Alan Shillerfrom Southern Mississippi. The site near the destroyed oil rig and subsequent massive oil spill into the ocean in 2010 released heavy metals into the environment.

Former UA graduate student Dr. Michael Ihde, now a faculty member at Williams College, led the Bonizzoni groups efforts to combine their method for using an array of receptors in a chemical sensor with the polymer synthesis capabilities from a group led by Dr. Jason Azoulay at Southern Mississippi and his graduate student Joshua Tropp.

Researchers prepared bright fluorene-based light-emitting charged polymers with appended metal binding groups, and studied their interactions with metal pollutants, developing methods for their ultrasensitive detection and discrimination.

Through the collaboration, we made new polymers, we combined them in a physical sensing system, and we measured complex and challenging samples with it, Bonizzoni said.

After demonstrating this proof of principle, the research team will focus on streamlining the procedure to fit inside a portable sensing system that could be operated by most anyone as a self-contained testing device deployed on a boat or, possibly, on a buoy that passively and continuously monitors the water; however, that future is several steps away.

Contact

Adam Jones, UA communications, 205-348-4328, adam.jones@ua.edu

The University of Alabama, part of The University of Alabama System, is the states flagship university. UA shapes a better world through its teaching, research and service. With a global reputation for excellence, UA provides an inclusive, forward-thinking environment and nearly 200 degree programs on a beautiful, student-centered campus. A leader in cutting-edge research, UA advances discovery, creative inquiry and knowledge through more than 30 research centers. As the states largest higher education institution, UA drives economic growth in Alabama and beyond.

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UA Researchers Develop Way to Test Water for Metal Pollutants - The University of Alabama