Smouse, P. E. & Peakall, R. O. D. Spatial autocorrelation analysis of individual multiallele and multilocus genetic structure. Heredity 82(5), 561573 (1999).

PubMed Article Google Scholar

Liu, J. X., Gao, T. X., Wu, S. F. & Zhang, Y. P. Pleistocene isolation in the Northwestern Pacific marginal seas and limited dispersal in a marine fish, Chelon haematocheilus (Temminck & Schlegel, 1845). Mol. Ecol. 16(2), 275288 (2007).

CAS PubMed Article Google Scholar

Ding, S., Mishra, M., Wu, H., Liang, S. & Miyamoto, M. M. Characterization of hybridization within a secondary contact region of the inshore fish, Bostrychus sinensis, in the East China Sea. Heredity 120(1), 5162 (2018).

CAS PubMed Article Google Scholar

Ashrafzadeh, M. R. et al. Assessing the origin, genetic structure and demographic history of the common pheasant (Phasianus colchicus) in the introduced European range. Sci. Rep. 11(1), 114 (2021).

Article CAS Google Scholar

Caccavo, J. A. et al. Along-shelf connectivity and circumpolar gene flow in Antarctic silverfish (Pleuragramma antarctica). Sci. Rep. 8(1), 116 (2018).

Article CAS Google Scholar

Otwoma, L. M., Reuter, H., Timm, J. & Meyer, A. Genetic connectivity in a herbivorous coral reef fish (Acanthurus leucosternon Bennet, 1833) in the Eastern African region. Hydrobiologia 806(1), 237250 (2018).

Article Google Scholar

Li, H., Lin, H., Li, J. & Ding, S. Phylogeography of the Chinese beard eel, Cirrhimuraena chinensis Kaup, inferred from mitochondrial DNA: A range expansion after the last glacial maximum. Int. J. Mol. Sci. 15(8), 1356413577 (2014).

CAS PubMed PubMed Central Article Google Scholar

Gao, B., Song, N., Li, Z., Gao, T. & Liu, L. Population genetic structure of Nuchequula mannusella (Perciformes: Leiognathidae) population in the Southern Coast of China inferred from complete sequence of mtDNA Cyt b gene. Pak. J. Zool. 51(4), 15271535 (2019).

Article Google Scholar

Qiu, F., Li, H., Lin, H., Ding, S. & Miyamoto, M. M. Phylogeography of the inshore fish, Bostrychus sinensis, along the Pacific coastline of China. Mol. Phylogenet. Evol. 96, 112117 (2016).

PubMed Article Google Scholar

Gu, S. et al. Genetic diversity and population structure of cutlassfish (Lepturacanthus savala) along the coast of mainland China, as inferred by mitochondrial and microsatellite DNA markers. Reg. Stud. Mar. Sci. 43, 101702 (2021).

Google Scholar

Liu, Q. et al. Genetic variation and population genetic structure of the large yellow croaker (Larimichthys crocea) based on genome-wide single nucleotide polymorphisms in farmed and wild populations. Fish. Res. 232, 105718 (2020).

Article Google Scholar

Song, P. et al. Genetic characteristics of yellow seabream Acanthopagrus latus (Houttuyn, 1782) (Teleostei: Sparidae) after stock enhancement in southeastern China coastal waters. Reg. Stud. Mar. Sci. 48, 102065 (2021).

Google Scholar

Ward, R. D. Genetics in fisheries management. Hydrobiologia 420, 191201 (2000).

CAS Article Google Scholar

Liu, X., Guo, Y., Wang, Z. & Liu, C. The complete mitochondrial genome sequence of Trichiurus nanhaiensis (Perciformes: Trichiuridae). Mitochondrial DNA 24(5), 516517 (2013).

CAS PubMed Article Google Scholar

Wang, H. Y., Dong, C. A. & Lin, H. C. DNA barcoding of fisheries catch to reveal composition and distribution of cutlassfishes along the Taiwan coast. Fish. Res. 187, 103109 (2017).

Article Google Scholar

Guo, Y. S., Liu, X. M., Wang, Z. D., Lu, H. S. & Liu, C. W. Isolation and characterization of microsatellite DNA loci from Naihai cutlassfish (Trichiurus nanhaiensis). J. Genet. 93(1), 109112 (2014).

Article Google Scholar

Kwok, K. Y. & Ni, I. H. Reproduction of cutlassfishes Trichiurus spp. from the South China Sea. Mar. Ecol. Prog. Ser. 176, 3947 (1999).

ADS Article Google Scholar

He, L. et al. Demographic response of cutlassfish (Trichiurus japonicus and T. nanhaiensis) to fluctuating palaeo-climate and regional oceanographic conditions in the China seas. Sci. Rep. 4(1), 110 (2014).

Google Scholar

Lin, H. C., Tsai, C. J. & Wang, H. Y. Variation in global distribution, population structures, and demographic history for four Trichiurus cutlassfishes. PeerJ 9, e12639 (2021).

PubMed PubMed Central Article CAS Google Scholar

Funk, W. C., McKay, J. K., Hohenlohe, P. A. & Allendorf, F. W. Harnessing genomics for delineating conservation units. Trends Ecol. Evol. 27(9), 489496 (2012).

PubMed PubMed Central Article Google Scholar

Tautz, D. Hypervariability of simple sequences as a general source for polymorphic DNA markers. Nucleic Acids Res. 17, 64636471 (1989).

CAS PubMed PubMed Central Article Google Scholar

Templeton, A. R. The, Eve hypotheses: A genetic critique and reanalysis. Am. Anthropol. 95, 5172 (1993).

Article Google Scholar

Van Oosterhout, C., Hutchinson, W. F., Wills, D. P. & Shipley, P. MICRO-CHECKER: Software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 4(3), 535538 (2004).

Article CAS Google Scholar

Frankham, R. Challenges and opportunities of genetic approaches to biological conservation. Biol. Conserv. 143(9), 19191927 (2010).

Article Google Scholar

Sun, P., Shi, Z., Yin, F. & Peng, S. Population genetic structure and demographic history of Pampus argenteus in the Indo-West Pacific inferred from mitochondrial cytochrome b sequences. Biochem. Syst. Ecol. 43, 5463 (2012).

CAS Article Google Scholar

Liu, S. Y. V. et al. Genetic stock structure of Terapon jarbua in Taiwanese waters. Mar. Coast. Fish. 7(1), 464473 (2015).

Article Google Scholar

Song, C. Y., Sun, Z. C., Gao, T. X. & Song, N. Structure analysis of mitochondrial DNA control region sequences and its applications for the study of population genetic diversity of Acanthogobius ommaturus. Russ. J. Mar. Biol. 46(4), 292301 (2020).

CAS Article Google Scholar

Yan, Y. R. et al. Cryptic diversity of the spotted scat Scatophagus argus (Perciformes: Scatophagidae) in the South China Sea: Pre-or post-production isolation. Mar. Freshw. Res. 71(12), 16401650 (2020).

Article Google Scholar

Hartl, D. L., Clark, A. G., & Clark, A. G. Principles of Population Genetics, vol. 116 (Sinauer Associates, 1997).

Wu, R. et al. Study on the nomenclature and taxonomie status of hairtail Trichiurus japonicus from the Chinese coastal waters. Genom. Appl. Biol. 37(9), 37823791 (2018).

Google Scholar

Xu, D. et al. Genetic diversity and population differentiation in the yellow drum Nibea albiflora along the coast of the China Sea. Mar. Biol. Res. 13(4), 456462 (2017).

Article Google Scholar

Wang, W. et al. Genetic diversity and population structure analysis of Lateolabrax maculatus from Chinese coastal waters using polymorphic microsatellite markers. Sci. Rep. 11(1), 111 (2021).

Article CAS Google Scholar

Cheng, Q., Chen, W. & Ma, L. Genetic diversity and population structure of small yellow croaker (Larimichthys polyactis) in the Yellow and East China seas based on microsatellites. Aquat. Living Resour. 32, 16 (2019).

Article Google Scholar

DeWoody, J. A. & Avise, J. C. Microsatellite variation in marine, freshwater and anadromous fishes compared with other animals. J. Fish Biol. 56(3), 461473 (2000).

CAS Article Google Scholar

Song, N., Yin, L., Sun, D., Zhao, L. & Gao, T. Fine-scale population structure of Collichtys lucidus populations inferred from microsatellite markers. J. Appl. Ichthyol. 35(3), 709718 (2019).

Article Google Scholar

Yin, W. et al. Species delimitation and historical biogeography in the genus Helice (Brachyura: Varunidae) in the Northwestern Pacific. Zool. Sci. 26(7), 467475 (2009).

CAS Article Google Scholar

Hewitt, G. The genetic legacy of the Quaternary ice ages. Nature 405(6789), 907913 (2000).

ADS CAS PubMed Article Google Scholar

Yi, M. R. et al. Genetic structure and diversity of the yellowbelly threadfin bream Nemipterus bathybius in the Northern South China Sea. Diversity 13(7), 324 (2021).

CAS Article Google Scholar

Chen, X., Wang, J. J., Ai, W. M., Chen, H. & Lin, H. D. Phylogeography and genetic population structure of the spadenose shark (Scoliodon macrorhynchos) from the Chinese coast. Mitochondrial DNA Part A 29(7), 11001107 (2018).

Article CAS Google Scholar

Huang, W. et al. Genetic diversity and large-scale connectivity of the scleractinian coral Porites lutea in the South China Sea. Coral Reefs 37(4), 12591271 (2018).

ADS Article Google Scholar

Hou, G. et al. Identification of eggs and spawning zones of hairtail fishes Trichiurus (Pisces: Trichiuridae) in Northern South China Sea, using DNA barcoding. Front. Environ. Sci. 9, 703029 (2021).

Article Google Scholar

Yamaguchi, K., Nakajima, M. & Taniguchi, N. Loss of genetic variation and increased population differentiation in geographically peripheral populations of Japanese char Salvelinus leucomaenis. Aquaculture 308, S20S27 (2010).

Article Google Scholar

Neo, M. L., Liu, L. L., Huang, D. & Soong, K. Thriving populations with low genetic diversity in giant clam species, Tridacna maxima and Tridacna noae, at Dongsha Atoll, South China Sea. Reg. Stud. Mar. Sci. 24, 278287 (2018).

Google Scholar

Jeanmougin, F., Thompson, J., Gouy, M., Higgins, D. & Gibson, T. Multiple sequence alignment with Clustal X. Trends Biochem. Sci. 23, 403405 (1998).

CAS PubMed Article Google Scholar

Librado, P. & Rozas, J. DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25(11), 14511452 (2009).

CAS PubMed Article Google Scholar

Kumar, S., Stecher, G., Li, M., Knyaz, C. & Tamura, K. MEGA X: Molecular evolutionary genetics analysis across computing platforms. Mol. Biol. Evol. 35, 15471549 (2018).

CAS PubMed PubMed Central Article Google Scholar

Zhang, D. et al. PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. Mol. Ecol. Resour. 20(1), 348355 (2020).

PubMed Article Google Scholar

Excoffier, L. & Lischer, H. E. Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Resour. 10(3), 564567 (2010).

PubMed Article Google Scholar

Tajima, F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123, 585595 (1989).

CAS PubMed PubMed Central Article Google Scholar

Fu, Y. X. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147(2), 915925 (1997).

CAS PubMed PubMed Central Article Google Scholar

Drummond, A. J., Suchard, M. A., Xie, D. & Rambaut, A. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol. Biol. Evol. 29(8), 19691973 (2012).

Visit link:
Genetic pattern and demographic history of cutlassfish (Trichiurus nanhaiensis) in South China Sea by the influence of Pleistocene climatic...